Multi-locus phylogeny of the tribe Tragelaphini (Mammalia, Bovidae) and species delimitation in bushbuck: Evidence for chromosomal speciation mediated by interspecific hybridization

Article

Hassanin, A., Houck, M., Tshikung, D., Kadjo, B., Davis, H. and Ropiquet, A. 2018. Multi-locus phylogeny of the tribe Tragelaphini (Mammalia, Bovidae) and species delimitation in bushbuck: Evidence for chromosomal speciation mediated by interspecific hybridization. Molecular Phylogenetics and Evolution. 129, pp. 96-105. https://doi.org/10.1016/j.ympev.2018.08.006
TypeArticle
TitleMulti-locus phylogeny of the tribe Tragelaphini (Mammalia, Bovidae) and species delimitation in bushbuck: Evidence for chromosomal speciation mediated by interspecific hybridization
AuthorsHassanin, A., Houck, M., Tshikung, D., Kadjo, B., Davis, H. and Ropiquet, A.
Abstract

The bushbuck is the most widespread bovid species in Africa. Previous mitochondrial studies have revealed a polyphyletic pattern suggesting the possible existence of two distinct species.
To assess this issue, we have sequenced 16 nuclear genes and one mitochondrial fragment (cytochrome b gene + control region) for most species of the tribe Tragelaphini, including seven bushbuck individuals belonging to the two divergent mtDNA haplogroups, Scriptus and Sylvaticus. Our phylogenetic analyses show that the Scriptus lineage is a sister-group of Sylvaticus in the nuclear tree, whereas it is related to Tragelaphus angasii in the mitochondrial tree. This mito-nuclear discordance indicates that the mitochondrial genome of Scriptus was acquired by introgression after one or several past events of hybridization between bushbuck and an extinct species closely related to T. angasii. The division into two bushbuck species is supported by the analyses of nuclear markers and by the karyotype here described for T. scriptus (2n = 57 M/58F), which is strikingly distinct from the one previously found for T. sylvaticus (2n = 33 M/34F). Molecular dating estimates suggest that the two species separated during the Early Pleistocene after an event of interspecific hybridization, which may have mediated massive chromosomal rearrangements in the common ancestor of T. scriptus.

PublisherElsevier
JournalMolecular Phylogenetics and Evolution
ISSN1055-7903
Publication dates
Online16 Aug 2018
Print01 Dec 2018
Publication process dates
Deposited03 Sep 2018
Accepted06 Aug 2018
Output statusPublished
Accepted author manuscript
License
Copyright Statement

© 2018. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/

Digital Object Identifier (DOI)https://doi.org/10.1016/j.ympev.2018.08.006
LanguageEnglish
Permalink -

https://repository.mdx.ac.uk/item/87x04

Log in to edit

Download files

Accepted author manuscript
HSSANINETAL-2018.docx
HSSANINETAL-2018.pdf
License: CC BY-NC-ND 4.0

  • 15
    total views
  • 20
    total downloads
  • 0
    views this month
  • 0
    downloads this month

Export as

Related outputs

Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina)
Porrelli, S., Gerbault-Seureau, M., Rozzi, R., Chikhi, R., Curaudeau, M., Ropiquet, A. and Hassanin, A. 2022. Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina). G3 Genes|Genomes|Genetics. https://doi.org/10.1093/g3journal/jkac234
Adaptive radiation and speciation in Rhipicephalus ticks: a medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients
Bakkes, D., Ropiquet, A., Chitimia-Dobler, L., Matloa, D., Apanaskevich, D., Horak, I., Mans, B. and Matthee, C. 2021. Adaptive radiation and speciation in Rhipicephalus ticks: a medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temperature variation gradients. Molecular Phylogenetics and Evolution. 162, pp. 1-23. https://doi.org/10.1016/j.ympev.2021.107178
Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes
Hassanin, A., Veron, G., Ropiquet, A., Jansen van Vuuren, B., Lécu, A., Goodman, S., Haider, J. and Nguyen Thanh, T. 2021. Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes. PLoS ONE. 16 (2). https://doi.org/10.1371/journal.pone.0240770
Characterization of the complete mitochondrial genome of Diplostomum baeri
Landeryou, T., Ropiquet, A., Kett, S., Wildeboer, D. and Lawton, S. 2020. Characterization of the complete mitochondrial genome of Diplostomum baeri. Parasitology International. 79. https://doi.org/10.1016/j.parint.2020.102166
Two new genera of Bovidae (Mammalia)
Ropiquet, A. and Hassanin, A. 2017. Two new genera of Bovidae (Mammalia). Dumerilia. 7, pp. 78-81.
The importance of correctly identifying the process responsible for spatial genetic structure in Leopard: a response to McManus and Smuts (2016)
Matthee, C. and Ropiquet, A. 2016. The importance of correctly identifying the process responsible for spatial genetic structure in Leopard: a response to McManus and Smuts (2016). Comptes Rendus Biologies. 339 (11-12), pp. 439-441. https://doi.org/10.1016/j.crvi.2016.09.004
Implications of spatial genetic patterns for conserving African leopards
Ropiquet, A., Knight, A., Born, C., Martins, Q., Balme, G., Kirkendall, L., Hunter, L., Senekal, C. and Matthee, C. 2015. Implications of spatial genetic patterns for conserving African leopards. Comptes Rendus Biologies. 338 (11), pp. 728-737. https://doi.org/10.1016/j.crvi.2015.06.019
Biological water quality assessment in running water sites harbouring the endangered crayfish, Austropotamobius pallipes based on macroinvertebrates and its potential in habitat selection for restocking
Grandjean, F., Jouteux, R., Ropiquet, A., Bachelier, E. and Bramard, M. 2001. Biological water quality assessment in running water sites harbouring the endangered crayfish, Austropotamobius pallipes based on macroinvertebrates and its potential in habitat selection for restocking. in: Whisson, E. (ed.) Freshwater Crayfish.XIII Perth, Australia Freshwater Crayfish.XIII.
Forte capacité de dispersion d’austropotamobius pallipes révélée par des marqueurs microsatellites dans un ruisseau français
Gouin, N., Souty-Grosset, C., Ropiquet, A. and Grandjean, F. 2002. Forte capacité de dispersion d’austropotamobius pallipes révélée par des marqueurs microsatellites dans un ruisseau français. Bulletin Français de la Pêche et de la Pisciculture. https://doi.org/10.1051/kmae:2002059
Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: application to the tribe Bovini (Cetartiodactyla, Bovidae)
Hassanin, A., An, J., Ropiquet, A., Nguyen, T. and Couloux, A. 2013. Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: application to the tribe Bovini (Cetartiodactyla, Bovidae). Molecular Phylogenetics and Evolution. 66 (3), pp. 766-775. https://doi.org/10.1016/j.ympev.2012.11.003
Has the kouprey (Bos Sauveli Urbain, 1937) been domesticated in Cambodia? = Le kouprey (Bos sauveli Urbain, 1937) a-t-il été domestiqué au Cambodge?
Hassanin, A., Ropiquet, A., Cornette, R., Tranier, M., Pfeffer, P., Candegabe, P. and Lemaire, M. 2006. Has the kouprey (Bos Sauveli Urbain, 1937) been domesticated in Cambodia? = Le kouprey (Bos sauveli Urbain, 1937) a-t-il été domestiqué au Cambodge? Comptes Rendus Biologies. 329 (2), pp. 124-135. https://doi.org/10.1016/j.crvi.2005.11.003
What is the taxonomic status of the Cambodian banteng and does it have close genetic links with the kouprey?
Hassanin, A. and Ropiquet, A. 2006. What is the taxonomic status of the Cambodian banteng and does it have close genetic links with the kouprey? Journal of Zoology. 271 (3), pp. 246-252. https://doi.org/10.1111/j.1469-7998.2006.00272.x
High dispersal ability of Austropotamobius pallipes revealed by microsatellite markers in a French brook
Gouin, N., Souty-Grosset, C., Ropiquet, A. and Grandjean, F. 2002. High dispersal ability of Austropotamobius pallipes revealed by microsatellite markers in a French brook. Bulletin Français de la Pêche et de la Pisciculture. https://doi.org/10.1051/kmae:2002059
Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae) and the taxonomic status of the Kouprey, Bos Sauveli Urbain 1937
Hassanin, A. and Ropiquet, A. 2004. Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae) and the taxonomic status of the Kouprey, Bos Sauveli Urbain 1937. Molecular Phylogenetics and Evolution. 33 (3), pp. 896-907. https://doi.org/10.1016/j.ympev.2004.08.009
Molecular phylogeny of caprines (Bovidae, Antilopinae): the question of their origin and diversification during the Miocene
Ropiquet, A. and Hassanin, A. 2005. Molecular phylogeny of caprines (Bovidae, Antilopinae): the question of their origin and diversification during the Miocene. Journal of Zoological Systematics and Evolutionary Research. 43 (1), pp. 49-60. https://doi.org/10.1111/j.1439-0469.2004.00290.x
Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae)
Ropiquet, A. and Hassanin, A. 2005. Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae). Molecular Phylogenetics and Evolution. 36 (1), pp. 154-168. https://doi.org/10.1016/j.ympev.2005.01.002
Mitochondrial and nuclear phylogenies of Cervidae (Mammalia, Ruminantia): systematics, morphology, and biogeography
Gilbert, C., Ropiquet, A. and Hassanin, A. 2006. Mitochondrial and nuclear phylogenies of Cervidae (Mammalia, Ruminantia): systematics, morphology, and biogeography. Molecular Phylogenetics and Evolution. 40 (1), pp. 101-117. https://doi.org/10.1016/j.ympev.2006.02.017
Hybrid origin of the Pliocene ancestor of wild goats
Ropiquet, A. and Hassanin, A. 2006. Hybrid origin of the Pliocene ancestor of wild goats. Molecular Phylogenetics and Evolution. 41 (2), pp. 395-404. https://doi.org/10.1016/j.ympev.2006.05.033
Resolving a zoological mystery: the kouprey is a real species
Hassanin, A. and Ropiquet, A. 2007. Resolving a zoological mystery: the kouprey is a real species. Proceedings of the Royal Society B: Biological Sciences. 274 (1627), pp. 2849-2855. https://doi.org/10.1098/rspb.2007.0830
Mitochondrial DNA variability in Giraffa Camelopardalis: consequences for taxonomy, phylogeography and conservation of giraffes in West and Central Africa
Hassanin, A., Ropiquet, A., Gourmand, A., Chardonnet, B. and Rigoulet, J. 2007. Mitochondrial DNA variability in Giraffa Camelopardalis: consequences for taxonomy, phylogeography and conservation of giraffes in West and Central Africa. Comptes Rendus Biologies. 330 (3), pp. 265-274. https://doi.org/10.1016/j.crvi.2007.02.008
Low genetic variability of the white-clawed crayfish in the Iberian Peninsula: its origin and management implications
Diéguez-Uribeondo, J., Royo, F., Souty-Grosset, C., Ropiquet, A. and Grandjean, F. 2008. Low genetic variability of the white-clawed crayfish in the Iberian Peninsula: its origin and management implications. Aquatic Conservation: Marine and Freshwater Ecosystems. 18 (1), pp. 19-31. https://doi.org/10.1002/aqc.811
Chromosome evolution in the subtribe Bovina (Mammalia, Bovidae): the karyotype of the Cambodian banteng (Bos javanicus birmanicus) suggests that Robertsonian translocations are related to interspecific hybridization
Ropiquet, A., Gerbault-Seureau, M., Deuve, J., Gilbert, C., Pagacova, E., Chai, N., Rubes, J. and Hassanin, A. 2008. Chromosome evolution in the subtribe Bovina (Mammalia, Bovidae): the karyotype of the Cambodian banteng (Bos javanicus birmanicus) suggests that Robertsonian translocations are related to interspecific hybridization. Chromosome Research. 16 (8), pp. 1107-1118. https://doi.org/10.1007/s10577-008-1262-2
SuperTRI: a new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences
Ropiquet, A., Li, B. and Hassanin, A. 2009. SuperTRI: a new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences. Comptes Rendus Biologies. 332 (9), pp. 832-847. https://doi.org/10.1016/j.crvi.2009.05.001
Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe Caprini (Bovidae, Antilopinae)
Hassanin, A., Ropiquet, A., Couloux, A. and Cruaud, C. 2009. Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe Caprini (Bovidae, Antilopinae). Journal of Molecular Evolution. 68 (4), pp. 293-310. https://doi.org/10.1007/s00239-009-9208-7
Genetic variability of Austropotamobius Italicus in the Marches region: implications for conservation
Cataudella, R., Paolucci, M., Delaunay, C., Ropiquet, A., Hassanin, A., Balsamo, M. and Grandjean, F. 2010. Genetic variability of Austropotamobius Italicus in the Marches region: implications for conservation. Aquatic Conservation: Marine and Freshwater Ecosystems. 20 (3), pp. 261-268. https://doi.org/10.1002/aqc.1099
A paradox revealed: karyotype evolution in the four-horned antelope occurs by tandem fusion (Mammalia, Bovidae, Tetracerus quadricornis)
Ropiquet, A., Hassanin, A., Pagacova, E., Gerbault-Seureau, M., Cernohorska, H., Kubickova, S., Bonillo, C., Rubes, J. and Robinson, T. 2010. A paradox revealed: karyotype evolution in the four-horned antelope occurs by tandem fusion (Mammalia, Bovidae, Tetracerus quadricornis). Chromosome Research. 18 (2), pp. 277-286. https://doi.org/10.1007/s10577-010-9115-1
Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes = Histoire évolutive des Cetartiodactyla (Mammalia, Laurasiatheria) racontée par l’analyse des génomes mitochondriaux
Hassanin, A., Delsuc, F., Ropiquet, A., Hammer, C., Jansen van Vuuren, B., Matthee, C., Ruiz-Garcia, M., Catzeflis, F., Areskoug, V., Nguyen, T. and Couloux, A. 2012. Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes = Histoire évolutive des Cetartiodactyla (Mammalia, Laurasiatheria) racontée par l’analyse des génomes mitochondriaux. Comptes Rendus Biologies. 335 (1), pp. 32-50. https://doi.org/10.1016/j.crvi.2011.11.002
Cryptic speciation and chromosomal repatterning in the South African climbing mice Dendromus (Rodentia, Nesomyidae)
Solano, E., Taylor, P., Rautenbach, A., Ropiquet, A. and Castiglia, R. 2014. Cryptic speciation and chromosomal repatterning in the South African climbing mice Dendromus (Rodentia, Nesomyidae). PLoS ONE. 9 (2), pp. 1-9. https://doi.org/10.1371/journal.pone.0088799
Examination of hemiplasy, homoplasy and phylogenetic discordance in chromosomal evolution of the Bovidae
Robinson, T. and Ropiquet, A. 2011. Examination of hemiplasy, homoplasy and phylogenetic discordance in chromosomal evolution of the Bovidae. Systematic Biology. 60 (4), pp. 439-450. https://doi.org/10.1093/sysbio/syr045