Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes
Article
Gómez-Rodríguez, C., Timmermans, M., Crampton-Platt, A. and Vogler, A. 2017. Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes. Methods in Ecology and Evolution. 8 (2), pp. 248-256. https://doi.org/10.1111/2041-210X.12667
Type | Article |
---|---|
Title | Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes |
Authors | Gómez-Rodríguez, C., Timmermans, M., Crampton-Platt, A. and Vogler, A. |
Abstract | Metagenomic shotgun sequencing, using Illumina technology, and de novo genome assembly of mixed field-collected amples of invertebrates readily produce mitochondrial genome sequences, allowing rapid identification and quantification of species diversity. However, intraspecific genetic variability present in the specimen pools is lost during mitogenome assembly, which limits the utility of ‘mitochondrial metagenomics’ for studies of population diversity. |
Keywords | Mitochondrial metagenomics, mito-metagenomics, genome skimming, Chrysomelidae, intraspecific variability, population genetics, DNA barcodes |
Publisher | Wiley |
Journal | Methods in Ecology and Evolution |
ISSN | 2041-210X |
Publication dates | |
Online | 17 Nov 2016 |
11 Feb 2017 | |
Publication process dates | |
Deposited | 17 Oct 2016 |
Accepted | 28 Sep 2016 |
Output status | Published |
Accepted author manuscript | |
Copyright Statement | This is the peer reviewed version of the following article: Gómez-Rodríguez, C., Timmermans, M. J. T. N., Crampton-Platt, A. and Vogler, A. P. (2017), Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes. Methods Ecol Evol, 8: 248–256. doi:10.1111/2041-210X.12667, which has been published in final form athttp://doi.org/10.1111/2041-210X.12667. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving." |
Digital Object Identifier (DOI) | https://doi.org/10.1111/2041-210X.12667 |
Language | English |
https://repository.mdx.ac.uk/item/86q84
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