A study of bacteria producing carbonic anhydrase enzyme for CaCO3 precipitation and soil biocementation

Article


Meandira, W., Mavroulidou, M., Timmermans, M., Gunn, M., Gray, C., Pantoja Munoz, L. and Purchase, D. 2024. A study of bacteria producing carbonic anhydrase enzyme for CaCO3 precipitation and soil biocementation. Environmental Science and Pollution Research. 31 (33), pp. 45818-45833. https://doi.org/10.1007/s11356-024-34077-0
TypeArticle
TitleA study of bacteria producing carbonic anhydrase enzyme for CaCO3 precipitation and soil biocementation
AuthorsMeandira, W., Mavroulidou, M., Timmermans, M., Gunn, M., Gray, C., Pantoja Munoz, L. and Purchase, D.
Abstract

We study the carbonic anhydrase (CA) pathway using autochthonous CA-producing bacteria as a means of inducing calcite precipitation, which acts as a biocement to improve the engineering soil properties. Forty different microbial strains producing CA were isolated from the foundation soil of a railway embankment in Prickwillow, UK. Three of the best CA-producing strains were selected and identified by DNA sequencing as Bacillus licheniformis, Bacillus toyonensis and Bacillus pumilus with CA activity values respectively of 1.79 U/ml, 1.42 U/ml and 1.55 U/ml. To optimise the treatments, we investigated the effect of pH, temperature, zinc co-factor and cementation solution molarity on the growth and CA activity and bioprecipitates, with CO2 added in the form of bicarbonate. Scanning electron microscope (SEM) analysis of the bioprecipitates showed that these had characteristic morphologies of calcite and vaterite crystals. The formation of calcite was further corroborated by FT-IR and Raman analysis of bioprecipitates. The precultured bacteria were injected into the fine-grained soil together with cementation solution. Unconfined compressive strength in treated soil increased up to 1 MPa, and its calcium carbonate content increased by 2.78%. This, as well as the stability of the treated soil upon water immersion, proved the biocementation of the fine-grained soil. These findings suggest the potential of employing the CA biocementation route for soil stabilisation pending further development of the technique.

KeywordsCarbonic anhydrase enzyme; Microbiological study; Calcite precipitation; Biocementation; Ground improvement
Sustainable Development Goals12 Responsible consumption and production
Middlesex University ThemeSustainability
PublisherSpringer
JournalEnvironmental Science and Pollution Research
ISSN0944-1344
Electronic1614-7499
Publication dates
Online08 Jul 2024
PrintJul 2024
Publication process dates
Submitted01 Feb 2024
Accepted18 Jun 2024
Deposited06 Aug 2024
Output statusPublished
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Open
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This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

Digital Object Identifier (DOI)https://doi.org/10.1007/s11356-024-34077-0
LanguageEnglish
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Kishor, R., Purchase, D., Ferreira, L., Mulla, S., Bilal, M. and Bharagava, R. 2020. Environmental and health hazards of textile industry wastewater pollutants and its treatment approaches. in: Hussain, C. (ed.) Handbook of Environmental Materials Management Cham, Switzerland Springer Nature. pp. 1-24
A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants
Marano, R., Fernandes, T., Manaia, C., Nunes, O., Morrison, D., Berendonk, T., Kreuzinger, N., Telson, T., Corno, G., Fatta-Kassinos, D., Merlin, C., Topp, E., Jurkevitch, E., Henn, L., Scott, A., Heß, S., Slipko, K., Laht, M., Kisand, V., Di Cesare, A., Karaolia, P., Michael, S., Petre, A., Rosal, R., Pruden, A., Riquelme, V., Agüera, A., Esteban, B., Luczkiewicz, A., Kalinowska, A., Leonard, A., Gaze, W., Adegoke, A., Stenstrom, T., Pollice, A., Salerno, C., Schwermer, C., Krzeminski, P., Guilloteau, H., Donner, E., Drigo, B., Libralato, G., Guida, M., Bürgmann, H., Beck, K., Garelick, H., Tacão, M., Henriques, I., Martínez-Alcalá, I., Guillén-Navarro, J., Popowska, M., Piotrowska, M., Quintela-Baluja, M., Bunce, J., Polo-López, M., Nahim-Granados, S., Pons, M., Milakovic, M., Udikovic-Kolic, N., Ory, J., Ousmane, T., Caballero, P., Oliver, A., Rodriguez-Mozaz, S., Balcazar, J., Jäger, T., Schwartz, T., Yang, Y., Zou, S., Lee, Y., Yoon, Y., Herzog, B., Mayrhofer, H., Prakash, O., Nimonkar, Y., Heath, E., Baraniak, A., Abreu-Silva, J., Choudhury, M., Pantoja Munoz, L., Krizanovic, S., Brunetti, G., Maile-Moskowitz, A., Brown, C. and Cytryn, E. 2020. A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants. Environment International. 144, pp. 1-11. https://doi.org/10.1016/j.envint.2020.106035
Antibiotic selective pressure in microcosms: pollution influences the persistence of multidrug resistant Shigella flexneri 2a YSH6000 strain in polluted river water samples
Maruzani, R., Pathak, A., Ward, M., Serafim, V., Pantoja Munoz, L., Shah, A. and Marvasi, M. 2020. Antibiotic selective pressure in microcosms: pollution influences the persistence of multidrug resistant Shigella flexneri 2a YSH6000 strain in polluted river water samples. Environmental Technology and Innovation. 19. https://doi.org/10.1016/j.eti.2020.100821
Implementation of biocementation for a partially saturated problematic soil of the UK railway network
Safdar, M., Mavroulidou, M., Gunn, M., Gray, C., Purchase, D., Garelick, J. and Payne, I. 2020. Implementation of biocementation for a partially saturated problematic soil of the UK railway network. Cardoso, R., Jommi, C. and Romero, E. (ed.) 4th European Conference on Unsaturated Soils. Lisboa, Portugal 19 - 21 Oct 2020 EDP Sciences. https://doi.org/10.1051/e3sconf/202019505006
Degradation and detoxification of leather tannery effluent by a newly developed bacterial consortium GS-TE1310 for environmental safety
Saxena, G., Purchase, D., Mulla, S. and Bharagava, R. 2020. Degradation and detoxification of leather tannery effluent by a newly developed bacterial consortium GS-TE1310 for environmental safety. Journal of Water Process Engineering. 38. https://doi.org/10.1016/j.jwpe.2020.101592
Mimicry diversification in Papilio dardanus via a genomic inversion in the regulatory region of engrailed – invected
Timmermans, M., Srivathsan, A., Collins, S., Meier, R. and Vogler, A. 2020. Mimicry diversification in Papilio dardanus via a genomic inversion in the regulatory region of engrailed – invected. Proceedings of the Royal Society B: Biological Sciences. 287 (1926). https://doi.org/10.1098/rspb.2020.0443
Global occurrence, chemical properties, and ecological impacts of e-wastes (IUPAC technical report)
Purchase, D., Abbasi, G., Bisschop, L., Chatterjee, D., Ekberg, C., Ermolin, M., Fedotov, P., Garelick, H., Isimekhai, K., Kandile, N., Lundstrom, M., Matharu, A., Miller, B., Pineda, A., Popoola, O., Retegan, T., Ruedel, H., Serpe, A., Shevah, Y., Surati, K., Walsh, F., Wilson, B. and Wong, M. 2020. Global occurrence, chemical properties, and ecological impacts of e-wastes (IUPAC technical report). Pure and Applied Chemistry. 92 (11), pp. 1733-1767. https://doi.org/10.1515/pac-2019-0502
Exploitation of nitric oxide donors to control bacterial adhesion on ready‐to‐eat vegetables and dispersal of pathogenic biofilm from polypropylene
Islam, M., Durie, I., Ramadan, R., Purchase, D. and Marvasi, M. 2020. Exploitation of nitric oxide donors to control bacterial adhesion on ready‐to‐eat vegetables and dispersal of pathogenic biofilm from polypropylene. Journal of the Science of Food and Agriculture. 100 (7), pp. 3078-3086. https://doi.org/10.1002/jsfa.10340
Phylogeny of the Hawkmoth tribe Ambulycini: mitogenomes from museum specimens resolve major relationships
Timmermans, M., Daghmoumi, S., Glass, D., Hamilton, C., Kawahara, A. and Kitching, I. 2019. Phylogeny of the Hawkmoth tribe Ambulycini: mitogenomes from museum specimens resolve major relationships. Insect Systematics and Diversity. 3 (6). https://doi.org/10.1093/isd/ixz025
Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives
Hamilton, C., St Laurent, R., Dexter, K., Kitching, I., Breinholt, J., Zwick, A., Timmermans, M., Barber, J. and Kawahara, A. 2019. Phylogenomics resolves major relationships and reveals significant diversification rate shifts in the evolution of silk moths and relatives. BMC Evolutionary Biology. 19 (1), pp. 1-13. https://doi.org/10.1186/s12862-019-1505-1
Characterisation of rare earth elements in waste printed circuit boards (WPCBs) and their bioleaching potential
Gonzalez Baez, A., Pantoja Munoz, L., Garelick, H. and Purchase, D. 2019. Characterisation of rare earth elements in waste printed circuit boards (WPCBs) and their bioleaching potential. 16th International Conference on Environmental Science and Technology. Rhodes, Greece 04 - 07 Sep 2019
Phytoremediation of heavy metal-contaminated sites: Eco-environmental concerns, field studies, sustainability issues, and future prospects
Saxena, G., Purchase, D., Mulla, S., Saratale, G. and Bharagava, R. 2019. Phytoremediation of heavy metal-contaminated sites: Eco-environmental concerns, field studies, sustainability issues, and future prospects. in: de Voogt, P. (ed.) Reviews of Environmental Contamination and Toxicology Volume 249 Springer. pp. 71-131
Phytotoxicity, cytotoxicity and genotoxicity evaluation of organic and inorganic pollutants rich tannery wastewater from a Common Effluent Treatment Plant (CETP) in Unnao district, India using Vigna radiata and Allium cepa
Yadav, A., Raj, A., Purchase, D., Ferreira, L., Saratale, G. and Bharagava, R. 2019. Phytotoxicity, cytotoxicity and genotoxicity evaluation of organic and inorganic pollutants rich tannery wastewater from a Common Effluent Treatment Plant (CETP) in Unnao district, India using Vigna radiata and Allium cepa. Chemosphere. 224, pp. 324-332. https://doi.org/10.1016/j.chemosphere.2019.02.124
Levels of awareness and concentrations of heavy metals in the blood of electronic waste scavengers in Nigeria
Popoola, O., Popoola, A. and Purchase, D. 2019. Levels of awareness and concentrations of heavy metals in the blood of electronic waste scavengers in Nigeria. Journal of Health and Pollution. 9 (21), pp. 1-10. https://doi.org/10.5696/2156-9614-9.21.190311
Isolation and characterization of lignin-degrading bacterium Bacillus aryabhattai from pulp and paper mill wastewater and evaluation of its lignin-degrading potential
Zainith, S., Purchase, D., Saratale, G., Ferreira, L., Bilal, M. and Bharagava, R. 2019. Isolation and characterization of lignin-degrading bacterium Bacillus aryabhattai from pulp and paper mill wastewater and evaluation of its lignin-degrading potential. 3 Biotech. 9 (3). https://doi.org/10.1007/s13205-019-1631-x
A novel technology of solarization and phytoremediation enhanced with biosurfactant for sustainable treatment of PAH-contaminated soil
Futughe, A., Jones, H. and Purchase, D. 2018. A novel technology of solarization and phytoremediation enhanced with biosurfactant for sustainable treatment of PAH-contaminated soil. 15th International Phytotechnology Conference. Novi Sad, Serbia 01 - 05 Oct 2018
The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera
Linard, B., Crampton-Platt, A., Moriniere, J., Timmermans, M., Andújar, C., Arribas, P., Miller, K., Lipecki, J., Favreau, E., Hunter, A., Gómez-Rodríguez, C., Barton, C., Nie, R., Gillett, C., Breeschoten, T., Bocak, L. and Vogler, A. 2018. The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera. Molecular Phylogenetics and Evolution. 128, pp. 1-11. https://doi.org/10.1016/j.ympev.2018.07.008
Global approaches to environmental exposure - assessment of e-wastes
Purchase, D., Bisschop, L., Ekberg, C., Fedotov, P., Garelick, H., Kandile, N., Luque, R., Popoola, O., Rüdel, H., Serpe, A., Surati, K. and Wilson, B. 2018. Global approaches to environmental exposure - assessment of e-wastes. SETAC Europe 28th Annual Meeting. Rome, Italy 13 - 17 May 2018
Characterisation of "flushable" and "non-flushable" commercial wet wipes using microRaman, FTIR spectroscopy and fluorescence microscopy: to flush or not to flush
Pantoja Munoz, L., Gonzalez Baez, A., McKinney, D. and Garelick, H. 2018. Characterisation of "flushable" and "non-flushable" commercial wet wipes using microRaman, FTIR spectroscopy and fluorescence microscopy: to flush or not to flush. Environmental Science and Pollution Research. 25 (20), pp. 20268-20279. https://doi.org/10.1007/s11356-018-2400-9
Chemistry and the environment
Purchase, D., Obare, S., Unsworth, J. and Garelick, H. 2018. Chemistry and the environment. Chemistry International. 40 (2), pp. 46-51. https://doi.org/10.1515/ci-2018-0230
Two European Cornus L. feeding leafmining moths, Antispila petryi Martini, 1899, sp. rev. and A. treitschkiella (Fischer von Röslerstamm, 1843) (Lepidoptera, Heliozelidae): an unjustified synonymy and overlooked range expansion
van Nieukerken, E., Lees, D., Doorenweerd, C., Koster, S., Bryner, R., Schreurs, A., Timmermans, M. and Sattler, K. 2018. Two European Cornus L. feeding leafmining moths, Antispila petryi Martini, 1899, sp. rev. and A. treitschkiella (Fischer von Röslerstamm, 1843) (Lepidoptera, Heliozelidae): an unjustified synonymy and overlooked range expansion. Nota Lepidopterologica. 41 (1), pp. 39-86. https://doi.org/10.3897/nl.41.22264
Nature read in tooth and fur: non-invasive sampling of the Pygmy Shrew (Sorex minutus Linnaeus, 1766) on Lundy for population genetics
Legall, N., Kett, S. and Timmermans, M. 2016. Nature read in tooth and fur: non-invasive sampling of the Pygmy Shrew (Sorex minutus Linnaeus, 1766) on Lundy for population genetics. Journal of the Lundy Field Society. 5, pp. 101-108.
Applications of metagenomics in microbial bioremediation of pollutants: from genomics to environmental cleanup
Bharagava, R., Purchase, D., Saxena, G. and Mulla, S. 2018. Applications of metagenomics in microbial bioremediation of pollutants: from genomics to environmental cleanup. in: Das, S. and Dash, H. (ed.) Microbial Diversity in the Genomic Era Oxford, UK Elsevier, Academic Press. pp. 459-477
Oxidative and monoxygenase enzymatic response in Eisenia hortensis and Lumbricus terrestiris exposed to 3-, 4- and 5-ring hydrocarbons amended with biosurfactant
Popoola, S., Purchase, D. and Jones, H. 2018. Oxidative and monoxygenase enzymatic response in Eisenia hortensis and Lumbricus terrestiris exposed to 3-, 4- and 5-ring hydrocarbons amended with biosurfactant. SETAC AP 2018: 11th Society of Environmental Toxicology and Chemistry – Asia Pacific 2018. Daegu, Korea 16 - 19 Sep 2018
Competition of As and other Group 15 elements for surface binding sites of an extremophilic Acidomyces acidophilus isolated from a historical tin mining site
Chan, W., Wildeboer, D., Garelick, H. and Purchase, D. 2018. Competition of As and other Group 15 elements for surface binding sites of an extremophilic Acidomyces acidophilus isolated from a historical tin mining site. Extremophiles. 22 (5), pp. 795-809. https://doi.org/10.1007/s00792-018-1039-2
Black rabbits on Lundy: Tudor treasures or post-war phonies?
Timmermans, M., Elmi, H. and Kett, S. 2018. Black rabbits on Lundy: Tudor treasures or post-war phonies? Journal of the Lundy Field Society. 6, pp. 105-113.
What's on the menu: Drosera rotundifolia diet determination using DNA data
Lekesyte, B., Kett, S. and Timmermans, M. 2018. What's on the menu: Drosera rotundifolia diet determination using DNA data. Journal of the Lundy Field Society. 6, pp. 55-64.
Effect of anthropogenic pollution on the fitness of tetracycline sensitive Shigella flexneri in Thames river water
Maruzani, R., Canali, A., Serafim, V., Pantoja Munoz, L., Shah, A., Perito, B. and Marvasi, M. 2018. Effect of anthropogenic pollution on the fitness of tetracycline sensitive Shigella flexneri in Thames river water. Journal of Environmental Chemical Engineering. 6 (1), pp. 19-27. https://doi.org/10.1016/j.jece.2017.11.069
The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes
Nie, R., Breeschoten, T., Timmermans, M., Nadein, K., Xue, H., Bai, M., Huang, Y., Yang, X. and Vogler, A. 2018. The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes. Cladistics. 34 (2), pp. 113-130. https://doi.org/10.1111/cla.12196
To safeguard microgreens from contamination form Salmonella species
Selvam, S., Marvasi, M. and Purchase, D. 2017. To safeguard microgreens from contamination form Salmonella species. University Research Students Summer Conference 2017. London
Fitness analysis of tetracycline resistant and sensitive Shigella flexneri in lethal and sub-lethal concentrations of tetracycline in Thames river water microcosms
Maruzani, R., Shah, A., Pantoja Munoz, L. and Marvasi, M. 2017. Fitness analysis of tetracycline resistant and sensitive Shigella flexneri in lethal and sub-lethal concentrations of tetracycline in Thames river water microcosms. University Research Students Summer Conference 2017. London 2017
Microbial DNA analysis by MALDI-TOF mass spectrometry
Honisch, C., Serafim, V., Hennessy, N., Allen, D., Ring, C., Pantoja Munoz, L., Gharbia, S., Shah, A. and Shah, H. 2017. Microbial DNA analysis by MALDI-TOF mass spectrometry. in: Shah, H. and Gharbia, S. (ed.) MALDI-TOF and Tandem MS for Clinical Microbiology Oxford Wiley. pp. 187-209
Electronic waste – an emerging global environmental and health challenge in the 21st century
Purchase, D. 2017. Electronic waste – an emerging global environmental and health challenge in the 21st century. SmART Cities and Waste Research Workshop. London, United Kingdom 06 Apr 2017
Enhanced vermiremediation of hydrocarbon contamination using biosurfactant
Popoola, S., Jones, H. and Purchase, D. 2017. Enhanced vermiremediation of hydrocarbon contamination using biosurfactant. SETAC Europe 27th Annual Meeting. Brussels, Belgium 07 - 11 May 2017
A study of the inhibition of biofilm formation on multiple surfaces by a biosurfactant containing four discrete lipopeptides
Khonsari, S., Gonzalez Baez, A., Nguyen, H., Pantoja Munoz, L. and Purchase, D. 2017. A study of the inhibition of biofilm formation on multiple surfaces by a biosurfactant containing four discrete lipopeptides. Microbiology Society Annual Conference. Edinburgh, United Kingdom 03 - 06 Apr 2017
Coming of age
Purchase, D. 2011. Coming of age. Environmental Scientist. 20 (2), pp. 30-33.
A proteomic study on the responses to arsenate stress by an acidophilic fungal strain Acidomyces acidophilus WKC1
Chan, W., Wildeboer, D., Garelick, H. and Purchase, D. 2016. A proteomic study on the responses to arsenate stress by an acidophilic fungal strain Acidomyces acidophilus WKC1. Biotechnology World Convention. Sao Paulo, Brazil 15 - 17 Aug 2016 OMICS International. pp. 35-35 https://doi.org/10.4172/2155-952X.C1.058
Informal recycling of electronic wastes in developing countries: challenges and solutions
Purchase, D. 2017. Informal recycling of electronic wastes in developing countries: challenges and solutions. 16th International Chemistry and the Environment (ICCE) Conference. Oslo, Norway 18 - 22 Jun 2017
Can metals be used as tracers for organic contaminants in potentially e-waste-polluted environmental media?
Rüdel, H., Abbasi, G., Popoola, O. and Purchase, D. 2017. Can metals be used as tracers for organic contaminants in potentially e-waste-polluted environmental media? 16th International Conference on Chemistry and the Environment (ICCE 2017). Oslo, Norway 18 - 22 Jun 2017
Rapid identification of E. coli bacteriophages using mass spectrometry
Serafim, V., Ring, C., Pantoja Munoz, L., Shah, H. and Shah, A. 2017. Rapid identification of E. coli bacteriophages using mass spectrometry. Journal of Proteomics and Enzymology. 6 (1), pp. 1-5. https://doi.org/10.4172/2470-1289.1000130
Heavy metals distribution and risk assessment in soil from an informal e-waste recycling site in Lagos State, Nigeria
Isimekhai, K., Garelick, H., Watt, J. and Purchase, D. 2017. Heavy metals distribution and risk assessment in soil from an informal e-waste recycling site in Lagos State, Nigeria. Environmental Science and Pollution Research. 24 (20), pp. 17206-17219. https://doi.org/10.1007/s11356-017-8877-9
Heparan sulfate disaccharide measurement from biological samples using pre-column derivatization, UPLC-MS and single ion monitoring
Antia, I., Yagnik, D., Pantoja Munoz, L., Shah, A. and Hills, F. 2017. Heparan sulfate disaccharide measurement from biological samples using pre-column derivatization, UPLC-MS and single ion monitoring. Analytical Biochemistry. 530, pp. 17-30. https://doi.org/10.1016/j.ab.2017.04.019
Independent evolution of sexual dimorphism and female-limited mimicry in swallowtail butterflies (Papilio dardanus and Papilio phorcas)
Timmermans, M., Thompson, M., Collins, S. and Vogler, A. 2017. Independent evolution of sexual dimorphism and female-limited mimicry in swallowtail butterflies (Papilio dardanus and Papilio phorcas). Molecular Ecology. 26 (5), pp. 1273-1284. https://doi.org/10.1111/mec.14012
Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes
Gómez-Rodríguez, C., Timmermans, M., Crampton-Platt, A. and Vogler, A. 2017. Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes. Methods in Ecology and Evolution. 8 (2), pp. 248-256. https://doi.org/10.1111/2041-210X.12667
Uncovering trophic interactions in arthropod predators through DNA shotgun-sequencing of gut contents
Paula, D., Linard, B., Crampton-Platt, A., Srivathsan, A., Timmermans, M., Sujii, E., Pires, C., Souza, L., Andow, D. and Vogler, A. 2016. Uncovering trophic interactions in arthropod predators through DNA shotgun-sequencing of gut contents. PLoS ONE. 11 (9), pp. 1-14. https://doi.org/10.1371/journal.pone.0161841
Family-level sampling of mitochondrial genomes in coleoptera: compositional heterogeneity and phylogenetics
Timmermans, M., Barton, C., Haran, J., Ahrens, D., Culverwell, C., Ollikainen, A., Dodsworth, S., Foster, P., Bocak, L. and Vogler, A. 2016. Family-level sampling of mitochondrial genomes in coleoptera: compositional heterogeneity and phylogenetics. Genome Biology and Evolution. 8 (1), pp. 161-175. https://doi.org/10.1093/gbe/evv241
Mitogenomics of ‘old world Acraea’ butterflies reveals a highly divergent ‘Bematistes’
Timmermans, M., Lees, D., Thompson, M., Sáfián, S. and Brattström, O. 2016. Mitogenomics of ‘old world Acraea’ butterflies reveals a highly divergent ‘Bematistes’. Molecular Phylogenetics and Evolution. 97, pp. 233-241. https://doi.org/10.1016/j.ympev.2015.12.009
Mycoremediation of heavy metal/metalloid-contaminated soil: current understanding and future prospects
Chan, W., Wildeboer, D., Garelick, H. and Purchase, D. 2016. Mycoremediation of heavy metal/metalloid-contaminated soil: current understanding and future prospects. in: Purchase, D. (ed.) Fungal Applications in Sustainable Environmental Biotechnology Cham, Switzerland Springer. pp. 249-272
Application of microalgae and fungal-microalgal associations for wastewater treatment
Egede, E., Jones, H., Cook, B., Purchase, D. and Mouradov, A. 2016. Application of microalgae and fungal-microalgal associations for wastewater treatment. in: Purchase, D. (ed.) Fungal Applications in Sustainable Environmental Biotechnology Cham Springer. pp. 143-181
The mechanisms of detoxification of As(III), dimethylarsinic acid (DMA) and As(V) in the microalga Chlorella vulgaris
Pantoja Munoz, L., Purchase, D., Jones, H., Raab, A., Urgast, D., Feldmann, J. and Garelick, H. 2016. The mechanisms of detoxification of As(III), dimethylarsinic acid (DMA) and As(V) in the microalga Chlorella vulgaris. Aquatic Toxicology. 175, pp. 56-72. https://doi.org/10.1016/j.aquatox.2016.02.020
Therapeutic potential of delivering arsenic trioxide into HPV-infected cervical cancer cells using liposomal nanotechnology
Wang, X., Li, D., Ghali, L., Xia, R., Pantoja Munoz, L., Garelick, H., Bell, C. and Wen, S. 2016. Therapeutic potential of delivering arsenic trioxide into HPV-infected cervical cancer cells using liposomal nanotechnology. Nanoscale Research Letters. 11 (1), pp. 1-8. https://doi.org/10.1186/s11671-016-1307-y
Rapid assembly of taxonomically validated mitochondrial genomes from historical insect collections
Timmermans, M., Viberg, C., Martin, G., Hopkins, K. and Vogler, A. 2016. Rapid assembly of taxonomically validated mitochondrial genomes from historical insect collections. Biological Journal of the Linnean Society. 117 (1), pp. 83-95. https://doi.org/10.1111/bij.12552
Microbial keratinases: characteristics, biotechnological applications and potential
Purchase, D. 2016. Microbial keratinases: characteristics, biotechnological applications and potential. in: Gupta, V., Sharma, G., Tuohy, M. and Gaur, R. (ed.) The Handbook of Microbial Bioresources Wallingford, UK CAB International (CABI). pp. 634-674
Metagenome skimming of insect specimen pools: potential for comparative genomics
Linard, B., Crampton-Platt, A., Gillett, C., Timmermans, M. and Vogler, A. 2015. Metagenome skimming of insect specimen pools: potential for comparative genomics. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evv086
Investigating arsenic resistance in fungi from tin-mining soil and the possible interaction between arsenic and tin/antimony
Chan, W., Wildeboer, D., Garelick, H. and Purchase, D. 2014. Investigating arsenic resistance in fungi from tin-mining soil and the possible interaction between arsenic and tin/antimony. 10th International Mycological Congress. Bangkok, Thailand 03 - 08 Aug 2014
Risk assessment at an informal e-waste recycling site in Lagos state, Nigeria
Isimekhai, K., Watt, J., Garelick, H. and Purchase, D. 2014. Risk assessment at an informal e-waste recycling site in Lagos state, Nigeria. Society for Risk Analysis Europe Conference. Istanbul, Turkey 16 - 18 Jun 2014
Soup to tree: the phylogeny of beetles inferred by mitochondrial metagenomics of a Bornean rainforest sample
Crampton-Platt, A., Timmermans, M., Gimmel, M., Kutty, S., Cockerill, T., Khen, C. and Vogler, A. 2015. Soup to tree: the phylogeny of beetles inferred by mitochondrial metagenomics of a Bornean rainforest sample. Molecular Biology and Evolution. 32 (9), pp. 2302-2316. https://doi.org/10.1093/molbev/msv111
Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea)
Gillett, C., Crampton-Platt, A., Timmermans, M., Jordal, B., Emerson, B. and Vogler, A. 2014. Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea). Molecular Biology and Evolution. 31 (8), pp. 2223-2237. https://doi.org/10.1093/molbev/msu154
Towards a mitogenomic phylogeny of Lepidoptera
Timmermans, M., Lees, D. and Simonsen, T. 2014. Towards a mitogenomic phylogeny of Lepidoptera. Molecular Phylogenetics and Evolution. 79, pp. 169-178. https://doi.org/10.1016/j.ympev.2014.05.031
Comparative genomics of the mimicry switch in Papilio dardanus
Timmermans, M., Baxter, S., Clark, R., Heckel, D., Vogel, H., Collins, S., Papanicolaou, A., Fukova, I., Joron, M., Thompson, M., Jiggins, C., ffrench-Constant, R. and Vogler, A. 2014. Comparative genomics of the mimicry switch in Papilio dardanus. Proceedings of the Royal Society B: Biological Sciences. 281 (1787), pp. 1-8. https://doi.org/10.1098/rspb.2014.0465
Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages
Gómez-Rodríguez, C., Crampton-Platt, A., Timmermans, M., Baselga, A. and Vogler, A. 2015. Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages. Methods in Ecology and Evolution. 6 (8), pp. 883-894. https://doi.org/10.1111/2041-210X.12376
Interplay of robustness and plasticity of life-history traits drives ecotypic differentiation in thermally distinct habitats
Liefting, M., van Grunsven, R., Morrissey, M., Timmermans, M. and Ellers, J. 2015. Interplay of robustness and plasticity of life-history traits drives ecotypic differentiation in thermally distinct habitats. Journal of Evolutionary Biology. 28 (5), pp. 1057-1066. https://doi.org/10.1111/jeb.12629
Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics
Andújar, C., Arribas, P., Ruzicka, F., Crampton-Platt, A., Timmermans, M. and Vogler, A. 2015. Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics. Molecular Ecology. 24 (14), pp. 3603-3617. https://doi.org/10.1111/mec.13195
Characterising the phenotypic diversity of Papilio dardanus wing patterns using an extensive museum collection
Thompson, M. and Timmermans, M. 2014. Characterising the phenotypic diversity of Papilio dardanus wing patterns using an extensive museum collection. PLoS ONE. 9 (5), pp. 1-9. https://doi.org/10.1371/journal.pone.0096815
Consideration of the bioavailability of metal/metalloid species in freshwaters: experiences regarding the implementation of biotic ligand model-based approaches in risk assessment frameworks
Rüdel, H., Diaz Muñiz, C., Garelick, H., Kandile, N., Miller, B., Pantoja Munoz, L., Peijnenburg, W., Purchase, D., Shevah, Y., Van Sprang, P., Vijer, M. and Vink, J. 2015. Consideration of the bioavailability of metal/metalloid species in freshwaters: experiences regarding the implementation of biotic ligand model-based approaches in risk assessment frameworks. Environmental Science and Pollution Research. 22 (10), pp. 7405-7421. https://doi.org/10.1007/s11356-015-4257-5
The mechanisms of arsenic detoxification by the green microalgae chlorella vulgaris
Pantoja Munoz, L. 2014. The mechanisms of arsenic detoxification by the green microalgae chlorella vulgaris. PhD thesis Middlesex University Science and Technology
The mechanisms of arsenic bioremediation from water by the green microalgae Chlorella vulgaris
Pantoja Munoz, L., Purchase, D., Jones, H., Feldmann, J. and Garelick, H. 2014. The mechanisms of arsenic bioremediation from water by the green microalgae Chlorella vulgaris. THE BNASS / TraceSpec Tandem Conference. Aberdeen, Scotland, UK 31 Aug - 04 Sep 2014
The evolutionary genetics of highly divergent alleles of the mimicry locus in Papilio dardanus
Thompson, M., Timmermans, M., Jiggins, C. and Vogler, A. 2014. The evolutionary genetics of highly divergent alleles of the mimicry locus in Papilio dardanus. BMC Evolutionary Biology. 14. https://doi.org/10.1186/1471-2148-14-140
Enhanced determination of As-phytochelatin complexes in Chlorella vulgaris using focused sonication for extraction of water-soluble species
Pantoja Munoz, L., Purchase, D., Jones, H., Feldmann, J. and Garelick, H. 2014. Enhanced determination of As-phytochelatin complexes in Chlorella vulgaris using focused sonication for extraction of water-soluble species. Analytical Methods. 6 (3), pp. 791-797. https://doi.org/10.1039/C3AY41629A
The removal of arsenate from water using iron-modified diatomite (D-Fe): isotherm and column experiments
Pantoja Munoz, L., Jones, H., Garelick, H., Mohamedbakr, H. and Burkitbayev, M. 2014. The removal of arsenate from water using iron-modified diatomite (D-Fe): isotherm and column experiments. Environmental Science and Pollution Research. 21 (1), pp. 495-506. https://doi.org/10.1007/s11356-013-1891-7
Enzymatic formulation capable of degrading scrapie prion under mild digestion conditions
Okoroma, E., Purchase, D., Garelick, H., Morris, R., Neale, M., Windl, O. and Abiola, O. 2013. Enzymatic formulation capable of degrading scrapie prion under mild digestion conditions. PLoS ONE. 8 (7), pp. 1-7. https://doi.org/10.1371/journal.pone.0068099
Identification and characterisation of a Bacillus licheniformis strain with profound keratinase activity for degradation of melanised feather
Okoroma, E., Garelick, H., Abiola, O. and Purchase, D. 2012. Identification and characterisation of a Bacillus licheniformis strain with profound keratinase activity for degradation of melanised feather. International Biodeterioration and Biodegradation. 74, pp. 54-60. https://doi.org/10.1016/j.ibiod.2012.07.013
Mathematical models to predict soil heavy metal toxicity in the 2012 Olympic site
Radiar, A. and Purchase, D. 2012. Mathematical models to predict soil heavy metal toxicity in the 2012 Olympic site. International Journal of Environmental Science and Technology. 9 (2), pp. 219-226. https://doi.org/10.1007/s13762-012-0027-9
Technical note: effects of arsenate (AS5+) on growth and production of glutathione (GSH) and phytochelatins (PCS) in Chlorella Vulgaris
Jiang, Y., Purchase, D., Jones, H. and Garelick, H. 2011. Technical note: effects of arsenate (AS5+) on growth and production of glutathione (GSH) and phytochelatins (PCS) in Chlorella Vulgaris. International Journal of Phytoremediation. 13 (8), pp. 834-844. https://doi.org/10.1080/15226514.2010.525560
A novel enzymatic composition effective for prion degradation
Okoroma, E., Purchase, D., Garelick, H. and Abiola, O. 2011. A novel enzymatic composition effective for prion degradation. Society for General Microbiology Spring Conference. Harrogate, UK 11 - 14 Apr 2011
Keratin degradation by proteolytic microorganisms isolated from activated sludge and farmyard manure: possible application in decontamination of prion protein
Purchase, D., Garelick, H., Okoroma, E., Christen, H. and Abiola, O. 2007. Keratin degradation by proteolytic microorganisms isolated from activated sludge and farmyard manure: possible application in decontamination of prion protein. BAGECO 9: 9th Symposium on Bacterial Genetics and Ecology. Wernigerode, Germany
Keratinase production by proteolytic micro-organisms in activated sludge and farmyard waste.
Okoroma, E., Purchase, D., Garelick, H. and Abiola, O. 2008. Keratinase production by proteolytic micro-organisms in activated sludge and farmyard waste. Society for General Microbiology, Autumn Meeting. Trinity College, Dublin, Ireland 08 - 11 Sep 2008
Bacterial keratinase: prospects for prion degradation.
Okoroma, E., Purchase, D., Garelick, H. and Abiola, O. 2009. Bacterial keratinase: prospects for prion degradation. Society for General Microbiology, Spring Meeting. Harrogate, UK 30 Mar - 02 Apr 2009
Degradation of scrapie infected brain homogenateby a novel bacterial keratinase
Okoroma, E., Purchase, D., Garelick, H., Jen, A., Morris, R. and Abiola, O. 2009. Degradation of scrapie infected brain homogenateby a novel bacterial keratinase. Prion 2009. Chalkidiki, Greece 23 - 25 Sep 2009
Effects of temperature on metal tolerance and the accumulation of Zn and Pb by metal-tolerant fungi isolated from urban runoff treatment wetlands
Purchase, D., Lundy, L., Revitt, D. and Shutes, B. 2009. Effects of temperature on metal tolerance and the accumulation of Zn and Pb by metal-tolerant fungi isolated from urban runoff treatment wetlands. Journal of Applied Microbiology. 106 (4), pp. 1163-1174. https://doi.org/10.1111/j.1365-2672.2008.04082.x
Effectiveness of domestic antibacterial products in decontaminating food contact surfaces
De Vere, E. and Purchase, D. 2007. Effectiveness of domestic antibacterial products in decontaminating food contact surfaces. Food Microbiology. 24 (4), pp. 425-430. https://doi.org/10.1016/j.fm.2006.07.013
Survival and nodulating ability of indigenous and inoculated rhizobium leguminosarum biovar trifolii in sterilized and unsterilized soil treated with sewage sludge
Purchase, D. and Miles, R. 2001. Survival and nodulating ability of indigenous and inoculated rhizobium leguminosarum biovar trifolii in sterilized and unsterilized soil treated with sewage sludge. Current Microbiology. 42 (1), pp. 59-64. https://doi.org/10.1007/s002840010179
Use of sequential extraction procedures for the analysis of cadmium and lead in sediment samples from a constructed wetland
Carapeto, C. and Purchase, D. 2000. Use of sequential extraction procedures for the analysis of cadmium and lead in sediment samples from a constructed wetland. Bulletin of Environmental Contamination and Toxicology. 64 (1), pp. 51-58. https://doi.org/10.1007/s001289910009
Distribution and removal of cadmium and lead in a constructed wetland receiving urban runoff
Carapeto, C. and Purchase, D. 2000. Distribution and removal of cadmium and lead in a constructed wetland receiving urban runoff. Bulletin of Environmental Contamination and Toxicology. 65 (3), pp. 322-329. https://doi.org/10.1007/s0012800131
The removal of urban pollutants by constructed wetlands during wet weather
Scholes, L., Shutes, R., Revitt, D., Purchase, D. and Forshaw, M. 1999. The removal of urban pollutants by constructed wetlands during wet weather. Water Science & Technology. 40 (3), pp. 333-340. https://doi.org/10.1016/S0273-1223(99)00467-9
The treatment of metals in urban runoff by constructed wetlands
Scholes, L., Shutes, R., Revitt, D., Forshaw, M. and Purchase, D. 1998. The treatment of metals in urban runoff by constructed wetlands. Science of the Total Environment. 214 (1-3), pp. 211-219. https://doi.org/10.1016/S0048-9697(98)00072-2
Expression and content of terminal oxidases in Azotobacter vinelandii grown with excess NH4+ are modulated by O-2 supply
Dmello, R., Purchase, D., Poole, R. and Hill, S. 1997. Expression and content of terminal oxidases in Azotobacter vinelandii grown with excess NH4+ are modulated by O-2 supply. Microbiology. 143 (1), pp. 231-237. https://doi.org/10.1099/00221287-143-1-231
Cadmium uptake and nitrogen fixing ability in heavy-metal-resistant laboratory and field strains of Rhizobium leguminosarum biovar trifolii
Purchase, D., Miles, R. and Young, T. 1997. Cadmium uptake and nitrogen fixing ability in heavy-metal-resistant laboratory and field strains of Rhizobium leguminosarum biovar trifolii. FEMS Microbiology Ecology. 22 (1), pp. 85-93. https://doi.org/10.1111/j.1574-6941.1997.tb00359.x